Citation¶
If you use hgt-site in your work, please cite it. Every release is archived on Zenodo with its own DOI, and the DOI below always points to the latest version:
The GitHub page has a "Cite this repository" button, which reads CITATION.cff and offers APA and BibTeX.
Author¶
Iraaj Gangavaram (ORCID 0009-0002-4615-2846)
Licence¶
MIT. See LICENSE.
Tools hgt-site builds on¶
- Kraken2, for the per-read classifications: Wood, Lu and Langmead (2019), Genome Biology 20:257.
- pysam, for reading BAM and CRAM files.
- nf-core/hgtseq, whose outputs hgt-site reads directly: Carenzo et al. (2023), NAR Genomics and Bioinformatics 5:lqad028.